When you turn ON the “Force custom post types to use their own capabilities” option at “User Role Editor Pro” settings “Additional Modules” page:

force custom post type use own capabilities
Force custom post type to use own user capabilities

URE applies it to all existing custom post types. If you need to exclude some custom post type from this action, leave the default capability type for selected custom post type, use the 'ure_set_cpt_own_caps' filter, like at the example below:

add_filter( 'ure_set_cpt_own_caps', 'set_cpt_own_caps', 10, 2 );
 * @param bool $do_it (TRUE by default)
 * @param string $post_type ('post', 'video', etc.) 
 * @return bool
function set_cpt_own_caps( $do_it, $post_type ) {
    if ( $post_type==='video') {
        $do_it = false;
    return $do_it;

This filter is available from version 4.59.3